FastQCFastQC Report
Sat 28 May 2022
EGAF00006158592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158592
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences24699212
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2031620.8225444601228574No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1589490.6435387493333795No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1481920.5999867526138081No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1208700.4893678389415824No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1063450.43056029479806884No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC920120.37253010338953324No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC865040.3502297968048535No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT629190.25474092047956837No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA499000.202030736851038No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC440490.1783417219950175No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC435290.1762363916711189No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG417420.16900134303879816No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA402440.16293637222110569No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC393390.15927228771508986No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA376570.15246235385971016No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG374930.15179836506524985No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG369970.1497902038332235No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC363040.1469844463054125No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA355630.143984350593857No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC334780.1355427857374559No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC322970.13076125667490932No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT310490.1257084638975527No Hit
GGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA304690.1233602108439735No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC298710.12093908097149011No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC294230.11912525792320823No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA286440.11597131114952168No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC279280.11307243324199978No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT276600.11198737838275974No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG271150.10978083025482756No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG257530.10426648429107778No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC253150.10249314836440936No Hit
TCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACC250580.1014526293389441No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)