FastQCFastQC Report
Sat 28 May 2022
EGAF00006158593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158593
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences26694403
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2776341.0400457354300074No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC2139110.8013327737653471No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2094620.7846663587119742No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1782700.667817894260456No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1200010.4495361817981095No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT1053870.39479062333778353No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT922470.34556682162923813No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC792500.29687871273989536No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC583030.21840907998579326No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA519850.19474119724647898No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC511700.1916881227873873No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG511440.19159072409298683No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT475500.1781272276439372No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG458850.1718899650986763No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA455250.17054136779159287No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG451800.16924896203897125No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC449720.1684697724837675No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA434560.1627906793794939No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC402680.15084810100454393No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC387240.14506411699860827No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG376400.14100334066283482No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC362960.13596857738305668No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG359690.1347436014957892No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT331720.12426574964047707No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAG314970.11799102605890831No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA313620.117485302068752No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA299400.11215834270577245No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC277520.10396186796160978No Hit
TGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC271920.10186404992836888No Hit
CTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGA270970.10150817008344408No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC269530.1009687311606107No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)