FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158595
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences31961065
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2936360.918730336426524No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2771630.8671895007253356No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2504420.7835846521384691No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1422660.4451228393046352No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1015320.31767401993644456No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC982190.3073082827496518No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC799850.2502576181363168No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG694520.21730189529041039No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG578420.18097644743690489No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC508600.15913111781475367No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT507970.1589340029814401No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG461140.14428180037179614No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC458610.14349021223166372No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC449880.14075876382717534No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC429860.13449489245743218No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG429600.13441354347860435No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT428110.13394735125378332No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT427440.13373772119295774No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC419980.13140363126197455No Hit
CACGCGACTCCCACAAGGTTGCAGCCGGAGCCGCCCAGCTC419020.13110326580168713No Hit
TTCTTCCCCTCTCTACAACCCTCTCTCCTCAGCGCTTCTTC413940.1295138319076664No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG411710.12881610797387383No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA403930.12638189622279483No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC401390.12558717927578447No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC398560.12470172692931228No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA387770.12132574430795719No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA375550.11750234230304903No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA373660.11691099780310825No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCA360250.11271526777971885No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC359550.1124962512982593No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG352260.11021535108420198No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC342000.10700519522738056No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA327220.10238081866170605No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC326720.10222437831780638No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA324030.10138272926762609No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)