FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158600
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences23611578
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC3080961.304851374186003No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2594411.098787213628839No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1722610.7295615735636135No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1343470.5689878075916823No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1173940.497188286187395No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT764990.32398935810219887No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG611000.25877135361304526No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT589440.24964024005511196No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC570870.2417754543978382No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG564060.23889127613580083No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC560480.23737507082330542No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA558010.23632897386189097No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC556110.23552428389157215No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA468330.19834760726284367No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC433730.18369377938230136No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC404140.17116179189717856No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC359620.1523066353294981No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG337790.1430611710915721No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC332200.1406936884946868No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC323840.1371530526252841No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG319340.13524720795873957No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG289270.12251193037585205No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA284070.12030962098340059No Hit
GCTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCTT271920.11516384038373038No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA269560.11416433073638704No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG267790.11341469850087951No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC266390.11282176904906568No Hit
CTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCTTT265400.11240248322242588No Hit
GGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTC254150.10763787155606457No Hit
CTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCC252410.10690094495166735No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC250900.10626142818578241No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG243600.10316972461561018No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)