FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158603
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences16568975
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2066611.2472769136292379No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1763861.0645558943748783No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1415590.8543618419365108No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA909000.5486157109899678No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT758570.45782554442866863No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT711720.4295498061889767No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC526320.317653928501914No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA519720.31367058010528714No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT501790.3028491502944509No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC484640.29249847983957966No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG481130.29038006273773725No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC477850.28840045929214086No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC469290.28323417712924304No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC405020.2444448132729997No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA395270.23856032132343732No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG361080.21792536955363867No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG352440.21271080437987264No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC338810.20448458640320238No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC333810.20146689822393965No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC320710.19356055519427123No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA283460.17107877825876375No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC269530.16267149899133773No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA235660.14222967926501187No Hit
GGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTC234070.1412700544240063No Hit
GCTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCTT232410.14026818194849108No Hit
CTCTTTCCCTTCGGTGTGCCACTGAAGATCCTGGTGTCGCC216750.13081678257104015No Hit
CTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCTTT214890.12969420256835443No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG209560.12647734696926033No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC209310.12632646256029717No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG206830.12482968922338286No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG195040.1177139804966813No Hit
TGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC190240.11481699984458905No Hit
CTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCC182520.11015768929580738No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA178520.10774353875239717No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA175910.10616830552282201No Hit
TCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACC168620.10176851615745694No Hit
CTCTCTCCAGGCGTCCTCGTGGAAGTGACATCGTCTTTAAA168610.10176248078109841No Hit
CTCTACCGGCGGGATTTGATGGCGTGATGTCTCACAGAAAG168590.10175041002838137No Hit
TTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCT167100.10085113895096107No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC166900.10073043142379055No Hit
GTGCGTTACTTACCTCGACTCTTAGCTTGTCGGGGACGGTA165800.10006654002435275No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)