FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158604
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences26491526
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2250970.8496943513182291No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2209680.8341082352145361No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1744100.6583614700036533No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1349410.5093742051703628No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC821010.3099141967133188No Hit
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGG773830.29210472813079924No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC755180.2850647410798457No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC476770.17997075744145505No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGG458150.17294209476645475No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC431530.16289359850391405No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT430200.16239155116998544No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT378240.1427777320189105No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA357060.13478272259589727No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC354780.13392207002344825No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG314270.11863038769454051No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC310350.1171506692366457No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT306140.11556148181120257No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC304150.1148102982063019No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT294820.1112884172848329No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG289960.1094538683804021No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG287960.10869890998351699No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC285030.10759289593208032No Hit
CTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTC284510.10739660674889018No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG282540.10665297272795836No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT271170.10236103424166657No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA268450.10133429082190282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)