FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158605
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences47910859
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT6270711.3088285476158965No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC3001880.6265552450228454No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2506070.5230693108633264No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2323300.48492138285393716No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1614520.3369841479986823No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG1572940.3283055309027125No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1447190.30205887145542515No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG1348850.28153325324432193No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC1081620.22575675380815025No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC933400.19482013461708128No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA874230.1824701160127394No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA864130.18036203441896126No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC785320.16391273635899534No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG776240.1620175501340938No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG756100.15781391020353025No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA749210.1563758228588638No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT711980.1486051418948677No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC701400.14639687424514763No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCA679550.14183632149029096No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT673320.14053598997254463No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC660910.13794576298454594No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC652220.1361319779300972No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA649160.13549329182346742No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA646860.13501323363874565No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG636330.1328154020365195No Hit
GGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA615730.12851575046901162No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC612880.12792089576185642No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC590640.1232789418365469No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA573430.1196868542891289No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT560630.1170152261306774No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC550120.11482156894744885No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA544820.11371534791309003No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC534530.11156760933883486No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG524820.10954092891550954No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG523310.1092257602811922No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA522870.10913392306324543No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC501700.10471530055430649No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG499750.10430829470204239No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC498600.10406826560968152No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT485670.10136950372774574No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT484860.10120043975834372No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)