FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158608
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences29146031
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3160451.0843500440934823No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1818850.6240472330520749No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1571560.5392020615088209No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1483890.5091224942428697No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1029140.35309781973401455No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC831080.2851434557247263No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC720070.2470559370502282No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG699960.24015619828305265No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG643970.22094603549965347No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC525300.18023037167564943No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC512970.17599995004465618No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA495930.17015352793661684No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC465320.1596512403352621No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA462040.15852587269944235No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT455700.15635061940337605No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG449630.15426800307733152No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA446620.1532352724115335No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG430360.14765646821689032No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC420760.14436270928278364No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC417700.14331282362253714No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT416640.14294913774022955No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC398300.13665668577652992No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG391950.13447800148157393No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA391180.13421381456706746No Hit
GGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA384860.13204542326878058No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC376390.12913936720920938No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA374060.12833994446791058No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC371440.1274410227588106No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCA367060.12593824524512445No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC366660.1258010052895367No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA348360.11952227732139582No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA333820.1145336049357801No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC321710.11037866528036014No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC317720.10900969672337205No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG315380.10820684298318353No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG312720.10729419727852482No Hit
CACGCGACTCCCACAAGGTTGCAGCCGGAGCCGCCCAGCTC307340.1054483198758692No Hit
TCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACC306910.10530078692361235No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT305200.1047140861134746No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT305090.10467634512568795No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT303090.10399014534774906No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA300530.10311180963198728No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)