FastQCFastQC Report
Thu 23 May 2024
EGAF00006159703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006159703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences236003706
Total Bases21 Gbp
Sequences flagged as poor quality0
Sequence length89
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA3694880.15656025333771667Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3030600.1284132377141569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)