FastQCFastQC Report
Fri 22 Jul 2022
EGAF00006160650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006160650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501773047
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGATACAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16661190.33204633249262594No Hit
AAATGATACAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6560080.13073799079526885No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG6057840.12072868473543179TruSeq Adapter, Index 27 (97% over 38bp)
AAATGATACAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5415080.1079189094028799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)