FastQCFastQC Report
Wed 13 Jul 2022
EGAF00006160662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006160662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452286398
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21750800.4809076747870716No Hit
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15137070.3346788686755952No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG5934850.13121884775318846TruSeq Adapter, Index 3 (97% over 35bp)
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5882030.13005100365631603No Hit

[OK]Adapter Content

Adapter graph