FastQCFastQC Report
Mon 25 Jul 2022
EGAF00006160663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006160663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452286398
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17949370.39685849672622703No Hit
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14675580.32447537809881255No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC6468500.14301778759218844Illumina Single End PCR Primer 1 (96% over 33bp)
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4677990.1034298183780446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)