FastQCFastQC Report
Wed 13 Jul 2022
EGAF00006160707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006160707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487932301
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17011990.34865472044245743No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12559400.25740046261048827No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC9762720.20008349477973997Illumina Single End PCR Primer 1 (96% over 33bp)
GTTGACGAATAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5410460.11088546482599028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)