FastQCFastQC Report
Sun 17 Jul 2022
EGAF00006160728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006160728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499069272
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20951050.41980244377778486No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12410230.2486674835793136No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG9823410.19683459894521416TruSeq Adapter, Index 3 (97% over 35bp)
GTTGACGAATAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6778710.13582703605121976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)