FastQCFastQC Report
Wed 13 Jul 2022
EGAF00006161149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006161149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432021557
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACAAATTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT25578770.5920716127598235No Hit
AGAACAAATTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20222960.46810071563165073No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC8384450.19407480631805601Illumina Single End PCR Primer 1 (96% over 31bp)
AGAACAAATTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4527130.10478944688401279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)