FastQCFastQC Report
Fri 3 May 2024
EGAF00006164258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006164258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33117521
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1763240.5324190781067218No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG586660.17714490163681032No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC345550.10434053925715031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)