FastQCFastQC Report
Mon 6 May 2024
EGAF00006165234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006165234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445813945
Total Bases67.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT24564870.5510117006321998No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12971690.29096644789790055No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9708900.21777919037503415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)