FastQCFastQC Report
Sat 18 Jun 2022
EGAF00006165594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006165594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16250193
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGCCGATATTCCTCTTGAAATTTAAGCGTAACGAATTGTGTTACGCAT452120.2782243878580396No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA375330.2309695644845572No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG309390.19039158488763794No Hit
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA300960.18520395419303637No Hit
GTGGAATACTCAAGTCCGTGGTGGACGGACAAATGTCTTCCCCACACGGA239330.1472782507875445No Hit
GTGGAATACTCAAGTCCGTGGTGGACGGACATTTGTCTGTCTCTGGCGGA201410.12394314332143624No Hit
GTGCCGATATTCCTCTTGAAATTTAAGCGTAACGAATTGTGTTACGCATA200790.12356160939134692No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)