FastQCFastQC Report
Sat 18 Jun 2022
EGAF00006165621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006165621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13294004
Sequences flagged as poor quality0
Sequence length151
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTAT658320.49520069348557444TruSeq Adapter, Index 13 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCGCGTAT166610.12532717757569503TruSeq Adapter, Index 13 (97% over 38bp)
AGTGAGTATAAGGGGTGGGTCATTAAATTCATCTTGGACACCCCCGTCAA134250.10098537656525453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)