FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006165642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006165642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11885281
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGCAGCCCCGAGGCGCCCTACTTAGATGGAGGGAAAGAGCGTAATGG541930.45596734313643905No Hit
GATGGTGATGTTATTGTGTGTTATGTGCCATTTCTGGACAATCAGTCAGT234150.19700838373110405No Hit
CCTCCCGCCCTTTCGTCCCTTACGGTATCCTAAATGTCTACTATTCTCCC233630.19657086778175462No Hit
CCGCCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGT232500.1956201119687452No Hit
CTCCGCCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCAC227690.19157308943726278No Hit
CTCTGACGTCATTTGTCTCAGGGCCCACGTTAAGCGAAAGGATGGAGCAT215190.1810558791163625No Hit
CCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAA206180.17347507391705758No Hit
CGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAAGCGAAAGGA197580.16623923321627818No Hit
CGTCATTTGTCTCAGGGCCCACGTTAAGCGAAAGGATGGAGCATACTGTA192410.16188931502755383No Hit
CGCCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTT192060.16159483313856862No Hit
ATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAAGCGA182580.15361858083119787No Hit
GTGGATGGTGATGTTATTGTGTGTTATGTGCCATTTCTGGACAATCAGTC180660.15200313732590756No Hit
GCCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTA177870.14965569598228262No Hit
TGGACAATCAGTCAGTCAGATTATTCGCACTTAAATTTGAATTTTTCTGA158550.13340029571029915No Hit
CTCTAAGTAGTGTCCACAGTCCCTCACCTCCCGCCCTTTCGTCCCTTACG150210.12638321298419447No Hit
CCCGCCCTTTCGTCCCTTACGGTATCCTAAATGTCTACTATTCTCCCATA147420.12403577164056954No Hit
CATTTCTGGACAATCAGTCAGTCAGATTATTCGCACTTAAATTTGAATTT146470.12323646365618111No Hit
CCTCCGCCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCA144140.12127605565236531No Hit
CTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAAGCGAAA142700.1200644730233976No Hit
CATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAAGCG139820.11764130776546217No Hit
TCCGCCGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACG136050.11446931713267866No Hit
ATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAAGCGAAAGGATGG131840.11092712069659942No Hit
CGCATCTACGCATCTACTCTGACGTCATTTGTCTCAGGGCCCACGTTAAG126140.1061312727902689No Hit
TTCTCCCATAGTCACCGTGTGTCCAATATGTTTGCAAAAAAAAGATGAGA125340.10545817132973129No Hit
CCATTTCTGGACAATCAGTCAGTCAGATTATTCGCACTTAAATTTGAATT120940.10175611329677439No Hit
GTCATTTGTCTCAGGGCCCACGTTAAGCGAAAGGATGGAGCATACTGTAC120820.10165514807769374No Hit
GGATGGTGATGTTATTGTGTGTTATGTGCCATTTCTGGACAATCAGTCAG119190.10028370385184834No Hit
CTGTGACGTCATCGTCCCCTATTAGATGCGCCCGGGGCGGAGGTTTAGTA119040.10015749732799753No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)