FastQCFastQC Report
Fri 22 Jul 2022
EGAF00006166957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006166957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526800592
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTGCGACAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28475170.5405303341041044No Hit
CCTTGCGACAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18759830.3561087493994312No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG9544790.1811841168166341TruSeq Adapter, Index 7 (97% over 34bp)
CCTTGCGACAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC8648600.16417217693635394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)