FastQCFastQC Report
Wed 1 May 2024
EGAF00006167141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006167141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29358629
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA760510.25904138779777486No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT624670.2127721972303271No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT553500.18853060202504687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)