FastQCFastQC Report
Sat 11 May 2024
EGAF00006167949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006167949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26883480
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length30-100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTT690510.25685290743609085No Hit
GTGCAGGAGGCGGCGGGTGTGGGGCTGCCTGCGGGCTGCGTCTAGTTGCA443920.16512743141884903No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT383990.14283493059678284No Hit
GTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGTGG341950.12719707418831191No Hit
CTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAG321220.11948601892314537No Hit
GCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGTGGGGCTGCCT293830.1092976058159137No Hit
CCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGCAGGTGGAGCT287470.10693184066943714No Hit
CTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGC283130.10531746633992325No Hit
CTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCT270330.10055617799481317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)