FastQCFastQC Report
Sat 11 May 2024
EGAF00006168017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006168017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30761161
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length30-100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT463510.1506802685373286No Hit
GTGCAGGAGGCGGCGGGTGGGGGGCTGCCTGCGGGCTGCGTCTAGTTGCA397820.129325417854027No Hit
CTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTTCTT393390.1278852901553358No Hit
CTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAG382080.12420857587267269No Hit
CTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTT363600.11820100028084116No Hit
GTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGG333510.10841918482855703No Hit
CTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCT324110.10536338339115353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)