FastQCFastQC Report
Sat 11 May 2024
EGAF00006168058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006168058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30570039
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length30-100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTT1139460.37273750288640456No Hit
CTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAG556760.1821260352333865No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT519290.16986893605206063No Hit
CCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGCAGGTGGAGCT489150.16000960940874168No Hit
CTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCT472960.15471357429409888No Hit
CTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGC463530.15162885464424825No Hit
CTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGACCCG395100.12924419232831205No Hit
GTGCAGGAGGCGGCGGGTGTGGGGCTGCCTGCAGGCTGCGTCTAGTTGCA382940.1252664414330646No Hit
GTACAGCATTGTTCCACAATGCCACGCTTCTGCAGGGACCCCTCCAGGGC382660.12517484848481875No Hit
GTATCAACGCAGAGTACGGGAGCCCTCCAGGACAGGCTGCATCAGAAGAG368430.12051996400789676No Hit
CATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGT363880.11903157859890201No Hit
CTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCC362920.11871754563348774No Hit
GCCATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCT357050.11679736489704838No Hit
GTATCAACGCAGAGTACGGGGAGCCCTCCAGGACAGGCTGCATCAGAAGA346610.11338225639816815No Hit
GTGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAG312490.10222100141906917No Hit
GTGCAGGAGGCGGCGGGTGGGGGGCTGCCTGCGGGCTGCGTCTAGTTGCA311640.10194295139760862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)