FastQCFastQC Report
Sun 21 May 2023
EGAF00006171461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006171461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429
Sequences flagged as poor quality0
Sequence length200
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT9622.377622377622377No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG4710.955710955710956No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGGCCAGTG409.324009324009324No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGTGTAGCC214.895104895104895No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGCGTAGTA102.331002331002331No Hit
CCCGTTTGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGAAGGGATCCAGCA92.097902097902098No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTATCGGACCAGTG61.3986013986013985No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATTAGTCCAGGT61.3986013986013985No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA61.3986013986013985No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTG51.1655011655011656No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTG40.9324009324009324No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACCGGTCCAGGG40.9324009324009324No Hit
CCTGTTTGCTCCCCACGCTTTCGCGTCTCAGCGTCAGTCACCGTCCAGAT40.9324009324009324No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGTTATCCCAGGG30.6993006993006993No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTAATGGGCCAGTG30.6993006993006993No Hit
TGTGTCAGCTACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTC30.6993006993006993No Hit
CCTGTTTACTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGGCCAGTG30.6993006993006993No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGTCTAGCC20.4662004662004662No Hit
GATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC20.4662004662004662No Hit
CCTGTTTGCTCCCCACGCTTTCGCCCCTCAGTGTCAGTATCAGTCCAGGT20.4662004662004662No Hit
CCGGATTGCTCCCCTAGCTTTCGTCCCTCACCGTCGGATCCGTTCTAGTT20.4662004662004662No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGG20.4662004662004662No Hit
CCTATTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT20.4662004662004662No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA20.4662004662004662No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATCTGTGTAGCC20.4662004662004662No Hit
GATACCGAGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC20.4662004662004662Illumina Single End PCR Primer 1 (95% over 21bp)
GATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC20.4662004662004662No Hit
TGTGTCAGCTACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTC20.4662004662004662No Hit
CTAGGATGCGTTTGGGGACCGCTGCCGTTACCGCGGCTGCTGGCACACAA10.2331002331002331No Hit
TGTGTCAGTTACCGCCGCGGCACGCACACAATTAACATAGTGTAGATGTC10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTATCAGTCCAGTA10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATCTATGTGTAGCC10.2331002331002331No Hit
AATGATTACTGCGGCGGCTGGCACACCATTACCAGCGTGTAGATCTCGGT10.2331002331002331No Hit
GATACAGCGGCAGCCAAAAAACAATGACCATCATGTAGCTTTCGGAGATA10.2331002331002331No Hit
AATGTTATTGCTTTCGCTGGCTCATATTTTTCACACTGTACTTTTTGTCG10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGTGCAGCC10.2331002331002331No Hit
AATGATACAGCGGCGGCTGGAACACAACTACCATAGTGTAGATCACGGAG10.2331002331002331No Hit
GAAAAGGAGGAGGGTGGAACACACAGAACATAGTGGAAAGATAGGAGAAA10.2331002331002331No Hit
AATGGTACCGAGAAGGCTGGCACACAACTACCATAGTGTAGATCTAGGTG10.2331002331002331No Hit
CCTGTTTGATCCCCACGCCTTCGTGCCTCAGCGTCAATATATGTGTAGCC10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTACGCACCTCAGTGTCAGTATCAGTCCAGGT10.2331002331002331No Hit
AATGATACCGCGGCTGCTGGCACACAATCACCATAGTGTAGATCTAGGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACGGGCCAGTA10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCTCCTCCGCGTCAGTATCAGTCCAGTT10.2331002331002331No Hit
CCTGCTTGCTCCCCACGCTTTCCCGCCCCAGCGTCATTAACGTGCCAGTG10.2331002331002331No Hit
TGTGTCAGTTACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTC10.2331002331002331No Hit
AATGGTACCGAGGCTGAGGGCACCCAAATAACAGAGTATAGAACACGGGG10.2331002331002331No Hit
AATGATACCGCGACTGCTGGCACACAATTACCATAGTGTAGATCTAGAAG10.2331002331002331No Hit
AATGATACCGCGGCGGCTGGCACACAATTAACAGAGTGTAGATCTAGGAG10.2331002331002331No Hit
AATTTTTGACGCACGTTTTCTTCTGCGTCAGTAAGAACGTCAGTGTTTCC10.2331002331002331No Hit
TCTGTTTTCTCCCCTCGTTCTCGCAACTTAGTGCCAGTTGTGGTCCAGGA10.2331002331002331No Hit
AATGATACCGCGGCTGCTGGCACACAACTACCATAGTGTAGATTTCGTAG10.2331002331002331No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGAACTCGGAG10.2331002331002331No Hit
AATGATACCGAGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTG10.2331002331002331No Hit
AATGATACCGCCGCTGATGGAACACAATTAACATAGTTTAGATCTCGGTG10.2331002331002331No Hit
CCTGTTCGCTACCCATGCTTTCGCTCCTCAGCGTCAGTAACTGCCCAGTA10.2331002331002331No Hit
AATGATACCGCGGCGGCTGGCACACATTACCATAGTGTAGCTCTCGGTGG10.2331002331002331No Hit
CGAGCGTACTACCCACACTCAGATGCACTAGCGGCGGTATAATCCCATGG10.2331002331002331No Hit
TGTGCCAGTTACAGCGGCTGCTGACACACACTTACGATAGTGTAGATCTC10.2331002331002331No Hit
CCTGTCTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT10.2331002331002331No Hit
AATGATACATCGGCTCCTGCCACACAATTACCATAGTGTAGATCTAGGTG10.2331002331002331No Hit
CCTGTTTACTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGTTCCAGGG10.2331002331002331No Hit
AATGGTACCGCGGCGGCGGGCACACAATTACCATAGTGTATAACTCGGTG10.2331002331002331No Hit
AATGATACCGCGGCTGCTGGCACACAATTAACATAGTGTAGATCTCGGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGTACAGGTCCAGGA10.2331002331002331No Hit
CATGATAACGCGGCGGCTGGCACACCATTACCATAGTGTAGATTTCCGTG10.2331002331002331No Hit
GATACCGCAGATAGTGGGACATAAAGACTATAAGGGTGATTTCAGTGGAC10.2331002331002331No Hit
GAAACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC10.2331002331002331No Hit
GATACGGAGGCTGCTGGCACACAATTACCACAGTGTAGATCTCGGTGGTA10.2331002331002331No Hit
GGAACGGAGGCTGCTGCGACAGTCAAACGACAAAGGAGATAATGATGCCC10.2331002331002331No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCAGAGTGTAGATCTCGGTG10.2331002331002331No Hit
TGTGTCAGTTACCGCGGCGGCTGGCACACAATTACGATAGTGTAGATCTC10.2331002331002331No Hit
AATGTTACCTAGGCGGATTGCACACAATTACCATAGTGTAGATCTCGGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGGGCGTCAGTACAGGTCCAGGG10.2331002331002331No Hit
CGAAAGTAATACAGCCACTTAGCCGACCTACCGTGGTTTTCATACTATTC10.2331002331002331No Hit
AATGATACAGCCGTGGCTGGCACACAAATACCATAGTGTAGAACACTGAG10.2331002331002331No Hit
AATGTTAACGAGGCGGCTGGCACACAATTACCATAGTGTATCTCTATGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTTTTATCCCAGGG10.2331002331002331No Hit
CCAGGGTACTACACACACTCTCGCAGCACACAGGCAGGATCAGACCAGGT10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCATCAGCCTCAGTCATGGCTTGGCA10.2331002331002331No Hit
AAAGGTACAGCGGATGCTGGCACACAACTACCATAGTGTAGATCACGGGG10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCACTATCTGTCTAGCC10.2331002331002331No Hit
CATGATTCCTCCCCACACTTTACACAATCACTATAGGTTAGATCTTAGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACGGGTCCAGGG10.2331002331002331No Hit
AATGATAACTCGGCTGATTGCACACAATTAACATAGTGTAAATTAAGGTG10.2331002331002331No Hit
AATGATACCGAGGCGGATGGCACACAACTACCATAGTGTAGAACTAGGAG10.2331002331002331No Hit
TACCGCGGCGGCTGGCACACAATTACCCTAGTGTAGCTCTCGGTGGTCGC10.2331002331002331No Hit
CTCGCCTCCTCCCCACCATTCACCAGCCGAGCGCTCGACTTTGGCCAGGG10.2331002331002331No Hit
ACTTCGAACTAACATCAGATACACTCTCCACCCAGGTTTACTCTATCTTC10.2331002331002331No Hit
TGTGTCAGCTACCGCGGCGGCTCGCGCACACTTACCCTAGTGTAGATCTA10.2331002331002331No Hit
AATGTTACCGCGGATGATGGCACACAACTACCATAGTGTAGATCTCGGTG10.2331002331002331No Hit
GATACCGCGGCGGCTGGCACACAATTACCATAGTGTCGATCTCGGTGGTC10.2331002331002331No Hit
CCAGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATCAGCGTCAGTACAGGTCCAGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTATCAGTCCAGGT10.2331002331002331No Hit
CCGGATTGATCCCCGAGCTTTCGTCCCTCACCGTCGGATCCGATCTAGTT10.2331002331002331No Hit
CCTGTTCGCTACCCACGCTCTCGTGCATAAGCGTCAGTTACAGTCTGGTA10.2331002331002331No Hit
TCTTCTGGCTGCCTTTGCTGGTGCTGATCTTTCTCCTGATGACGCCTGTA10.2331002331002331No Hit
AATGATACCGCGGCGGCTGGCACACAATTAACATAGTGTAGATCTCGGTG10.2331002331002331No Hit
CCTGTTTGCTCCCTACGCTTTCGCGCCTCAGCGTCAGTAACGGGCCAGTG10.2331002331002331No Hit
CCTTTTTGATCCCCACGCTTTCGTGCCTCAGCATCAATATATGTGTAGCC10.2331002331002331No Hit
AATGATACCGCGGCTCCTGGCACACCATCACCATAGTGTAGCTTTCGGTG10.2331002331002331No Hit
AATGATACCGCGACTGATGCCACACAATTACCATAGTGTAGATCTCGGTG10.2331002331002331No Hit
CCTGTTTGCTACCCACGCTTTCGTGCATGAGCGTCAGTACCGGTCCAGGG10.2331002331002331No Hit
AATGATACCGAGGCTGATGGCACACAACTACCATAGTGTAGAGCACGGAG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTA10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGTT10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG10.2331002331002331No Hit
CCCGTTTGCTCCCCACGCTTTCGCACCCCAGTGTCAGTATCAGTCCAGGT10.2331002331002331No Hit
ATGATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGCTCTCGGTGG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTTTCAGTCCAGGT10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGTTCTCCCAGTG10.2331002331002331No Hit
AATGATACCGCGGCGGCTTTCACACACTTACCGTAGTTTAGATTTCGGTG10.2331002331002331No Hit
AAATATCAATAGAGGCAGGAAGCCCGACTACAGAGGGAAGTATTAAGGAG10.2331002331002331No Hit
AATGATACCGCCGTTGATGGATCACAATTACCATAGTGTAGATTACGGTG10.2331002331002331No Hit
ACAGTCAGTCAGCCGGACTACCGCGGCGGCTGGCACACAATTACCATAGT10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAAAGGGCCAGTG10.2331002331002331No Hit
CAAAAAATATCCAGACCAATAGCAAGACTCAAAGGAGAACTAGTAAGAAC10.2331002331002331No Hit
GTTACCGAGGCGGCTGGCACACAATGACCATAGTGTAGATCTCGGTGGTC10.2331002331002331No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCACAGTATCGATTTAGGAG10.2331002331002331No Hit
AATGATACCTAGGCGCCGTTAACACAATTACCATCGTGTAGATCTAGGAG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGCATTAGTCCAGGT10.2331002331002331No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCATAGGGTAGATCTCTGTG10.2331002331002331No Hit
CCTGATACAGCGTCGCATTGCCAACCCTTAACATAGTGTCGCTTCCGGTG10.2331002331002331No Hit
ATGAACAAAATGTGACTCATATCTAAACCAGTCCTTGACGAACGTGCCAA10.2331002331002331No Hit
AATGATACCGAGGCTGAGTGCACACAATTAACATAGTGTATAACTAGGAG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGTCCAGTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGAT10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTAGCAGTCCAGGA10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCATCAGCGTCAGTCATGGCTTGGCA10.2331002331002331No Hit
CCTGTTTGCTACCCACGCTTTCGCGTCTCAGCGTCAGTCACCGTCCAGAT10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATTAGTCCAGTT10.2331002331002331No Hit
AATGATACCGAGACTGATTGCACACAACTACCATAGTGTAGAATACGGAG10.2331002331002331No Hit
GAAACGGACACCACTCCGACAGACTTACTATCATGGTACTACTGGTATAC10.2331002331002331No Hit
AATGATTACCGCGGCGGCTGGCACACAATTACCATAGTGTTGATCTCGGT10.2331002331002331No Hit
ATGATACCGCGGCTGCAGGCACACGCTTACCATAGTGTAGATCTATGTAG10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGTGTCAATAACTGTCCAGCA10.2331002331002331No Hit
TGTGTCAGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTC10.2331002331002331No Hit
CCTGTTCGCTACCCACGCTCTCGTGCATCAGCGTCAGTTACAGTCTGGTA10.2331002331002331No Hit
GCTTTTTGCTCCCCACGCTCAGCTGCACGCGCCCCCGTCTAGGTCCCAGT10.2331002331002331No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCAAGGTG10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCACTATCTGTGTAGCC10.2331002331002331No Hit
CCTGTTTGCACCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG10.2331002331002331No Hit
TGTGTCAGATACCGCGGCTCCTGGCACACAATTACCATTGTGTAGACCTC10.2331002331002331No Hit
TAACGCGGAGACAAGCAGACAATTACCCTAGTGTAGATCTAGGTAGTACA10.2331002331002331No Hit
GATACCGCGGCTGCTGGCACATCATTACCATAGTGTAGATCTCGGTGCTC10.2331002331002331No Hit
GAAACCGCAGATAATGGCACACCAGTACTATAGTGAGGATTTCGGTTGTC10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGTTAGCCCAGGG10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCACTATATGTGTAGCC10.2331002331002331No Hit
GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTG10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTCTCGTGCATGAGCGTCAGTACCGGTCCAGGG10.2331002331002331No Hit
TGTGTACCGCGGCAGCTGGTACACAATTACCATAGTGTAGATCTCGGTGG10.2331002331002331No Hit
GATACCGCGGAGGCTGGCACACAATAACCATAGTGAAGTTCTCGGTGGCC10.2331002331002331No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTATCGTCCAGTA10.2331002331002331No Hit
GATACCGCGGCTGCTGGCACACAATTACATAGTGTAGATCTCGGTGGTCG10.2331002331002331No Hit
CCTGTTTGCTACCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG10.2331002331002331No Hit
AATGATAAAGAGGCGCCTGTCACAGAATTACCATTGTGTCGATTCCTGAG10.2331002331002331No Hit
CGAGCCAAATAAAGACAGTGAGCTGGACACCAGGGAGATAAAGGCTGTTA10.2331002331002331No Hit
CCTGTTTGATCCCCACGCTTTCGTGCATCAGCGTCAGTCATGGCTTAGTA10.2331002331002331No Hit
AATGAGACCGAGGCGGCTGGCACAAAACTACCAAAGTGTAGATCTCGGAG10.2331002331002331No Hit
CCTGTTTGCTCCCCACACTTTCGCGCCTCAGCGTCAGTAACGGCCCAGTG10.2331002331002331No Hit
CCCTTTCGCTCCCCTGGCCTTCGTGCCTCAGCGTCAGTTAATGTCCAGGA10.2331002331002331No Hit
GATACCGCGGCGGCTGTCACATAATTACCATAGTGTAGATCTCGGTGACC10.2331002331002331No Hit
GATACCGCAGACACTCATACATAAACAACAACGTGGTAGTTAGAGATATA10.2331002331002331No Hit

[OK]Adapter Content

Adapter graph