FastQCFastQC Report
Sun 21 May 2023
EGAF00006171489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006171489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1743
Sequences flagged as poor quality0
Sequence length200
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT1045.9667240390131955No Hit
CCTGTTTGCTCCCCACGCTTTCGTACCTGAGCGTCAGTAAAAGTCCAGAA965.507745266781412No Hit
CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGATGATGACCAGAA885.048766494549628No Hit
CCTGTTTGCTACCCACGCTTTCGTGCCTCAGTGTCAGTTGCAGTCCAGAA663.7865748709122204No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG623.5570854847963282No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA402.2948938611589216No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACACTCCAGTG372.1227768215720024No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG362.0654044750430294No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA352.0080321285140563No Hit
CCTGTTTGATACCCACGCTTTCGTGCTTCAGTGTCAGTTGTAATGTAGTA311.7785427423981641No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTAACAGTCTAGTG271.549053356282272No Hit
CCTGTTTGCTACCCACGCTTTCGTTCCTCAGCGTCAGAATGAGCCCAGTA271.549053356282272No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTTATCGTCCAGTA251.4343086632243258No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTACAGGCCAAAA251.4343086632243258No Hit
CCTGTTTGATACCCACGCTTTCGTGCCTCAGTGTCAGTAGTAGTTTTGTA241.376936316695353No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTA241.376936316695353No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTGACAGTCTAGTG231.31956397016638No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTG221.262191623637407No Hit
CCTGTTTGCTACCCACGCTTTCGCGCTTCAGCGTCAGTATCTGTCCAGTA221.262191623637407No Hit
CCTGTTTGCTACCCACGCTTTCGCACCTCAGCGTCAGTTACCGTCCAGGT211.2048192771084338No Hit
CCTGTTTGCTCCCCACGCTTTCGTACCTCAGCGTCAGTTTGTGTCCAGAA201.1474469305794608No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG170.9753298909925416No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA160.9179575444635685No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTG150.8605851979345954No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAACGTCAGATATAGTTTGGTA140.8032128514056224No Hit
CCTGTTTGATACCCACACTTTCGAGCATGAACGTCAGTTACAGTTTAGCA140.8032128514056224No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCA120.6884681583476765No Hit
CCTGTTTGCTACCCACGCTTTCGTTCCTCAGCGTCAGTTTGTGTCCAGCA120.6884681583476765No Hit
CCGGTTCGCGCCCCTAGCTTTCGTCCCTCACCGTCAGAATCGTTCCAGTC100.5737234652897304No Hit
GATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC100.5737234652897304No Hit
CCTGTTTGCTCCCCATGCTTTCGTACCTCAGCGTCAGTATTAGGCCAGAT100.5737234652897304No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA100.5737234652897304No Hit
CCTGTTCTATCCCCACGCTTTCGTGCCTCAGCGTCAGTTACGGATTCGCC100.5737234652897304No Hit
CCTGTTCGATACCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCAGTG90.5163511187607573No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTGTCAGTCCAGAA90.5163511187607573No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA90.5163511187607573No Hit
CCTGTTTGCTCCCCACGCTTTCGTACCTGAGCGTCAGTAACAGTCCAGAA80.45897877223178424No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGTCGTCCAGCA80.45897877223178424No Hit
CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGATGCTGACCAGAA80.45897877223178424No Hit
CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGGTTATGGCCAGAA80.45897877223178424No Hit
CCTATTTGCTCCCCACGCTTTCGGGACTGAGCGTCAGTTGCAGGCCAGAT70.4016064257028112No Hit
CCTGTTTGCTCCCTACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT70.4016064257028112No Hit
CCCATTTGCTCCCCTAGCTTTCGTTCCTCAGCGTCAGTTACAGCCCAGCA70.4016064257028112No Hit
CCTGTTTGATCCCCACGCTTTCGTGCATCAGCGTCAGTCATGGCTTGGCA70.4016064257028112No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGG70.4016064257028112No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCA70.4016064257028112No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG60.34423407917383825No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTACCGGGCCAGTG60.34423407917383825No Hit
CCTGTTTGCTCCCCACACTTTCGCGCCTCACCGTCAGTTATCGTCCAGCA60.34423407917383825No Hit
GATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC60.34423407917383825No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTATCAGTCCAGGT50.2868617326448652No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGGCCAGTG50.2868617326448652No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG50.2868617326448652No Hit
CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTAGAGCCCAGCA50.2868617326448652No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTGACGGCCCAGAG50.2868617326448652No Hit
CCTGTTTGCTCCCCACGCTTTCGTCCCTGAGCGTCAGTAAAAGTCCAGAA40.22948938611589212No Hit
CCTGTTTGCTCCCCACACTTTCGCGCCTCAGCGTCAGTTACAGTCCAGTT40.22948938611589212No Hit
CCTGTTTGATACCCGCACCTTCGAGCTTAAGCGTCAGTTGCGCTCCCGCA40.22948938611589212No Hit
CCTGTTCGATACCCGCACCTTCGAGCCTCAGCGTCAGTTACGCTCCGGAT40.22948938611589212No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTTAGTTGGTGCCCAGTA40.22948938611589212No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTAGGTG40.22948938611589212No Hit
CCTGTTCGATACCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCCGTG40.22948938611589212No Hit
CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTAAAGCCCAGCA40.22948938611589212No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTGTCAGTCCAGTA40.22948938611589212No Hit
CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTT30.17211703958691912No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCA30.17211703958691912No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACCGGTCCAGGG30.17211703958691912No Hit
CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGAA30.17211703958691912No Hit
CCTGTTTGCTCCCCACGCTTTCGCCCCTGAGCGTCAGTCTTCGTCCAGGG30.17211703958691912No Hit
CCTGTTTGCTCCCCACGCTTTCGTACCTCAGCGTCAGAAAAAGTCCAGAA30.17211703958691912No Hit
CCTGTTTGCTCCCCTAGCTTTCGCACCTCAGCGTCAGAAACGGGCCAGCG30.17211703958691912No Hit
CCTATTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA20.11474469305794606No Hit
CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGGTTCTGGCCAGAA20.11474469305794606No Hit
CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGCTGATGACCAGAA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGCA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCA20.11474469305794606No Hit
CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCATGCACTGGAA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAATGAGCCAGTA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTACAGGCCACAA20.11474469305794606No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCCTAGCA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTGAACGTCAGTTACTGTCCAGTA20.11474469305794606No Hit
CCTGTTTGATACCCACACTTTCGAACATCAGTGTCAGTAACAGTCCAGTG20.11474469305794606No Hit
CCTGTTTGATCCCCATGCTTTCGTGCCTCAGCGTCAGTATATGGCCAGAT20.11474469305794606No Hit
CCTGTTTGATACCCACACTTTCGAACATCAGTGTCAGTAACAGTCTAGTG20.11474469305794606No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTAGGTG20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCCCAGTGTCAGTATCAGTCCAGGT20.11474469305794606No Hit
AATGATATCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTG20.11474469305794606No Hit
CCTATTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT20.11474469305794606No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGAG20.11474469305794606No Hit
CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTATAGCCCAGTA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGTACCTGAGCGTCAGCAAAAGTCCAGAA20.11474469305794606No Hit
AATGATACCGCGGCTGCTGTCACACAATTACCATAGTGTAGATCTCGGTG20.11474469305794606No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTAACAGTCTAGTA20.11474469305794606No Hit
CCTGTTTGCTACCCATGCTTTCGTGCCTCAGCGTCAGTTAAAGCCCAGCA20.11474469305794606No Hit
CCTGTTTGCTATCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA20.11474469305794606No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAA20.11474469305794606No Hit
CCTGTTTGCTACCCACACTTTCGCTCCTCAGTGTCAGTTTTAGTCCAGTT20.11474469305794606No Hit
CCTGTTTGCTACCCACGCTTTCGTCCCTCAGCGTCAGATGATGACCAGAA20.11474469305794606No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTGATCGTCCAGTA20.11474469305794606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)