FastQCFastQC Report
Sun 21 May 2023
EGAF00006171505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006171505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences220
Sequences flagged as poor quality0
Sequence length200
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTATCGTCCAGTA3315.0No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA188.181818181818182No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA104.545454545454546No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG94.090909090909091No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGGCCAGTG83.6363636363636362No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGTA73.1818181818181817No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGTGTAGCC73.1818181818181817No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT62.727272727272727No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA62.727272727272727No Hit
CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTAAAGCCCAGCA62.727272727272727No Hit
CCTGTTCGCTCCCCCAGCTTTCGCGCCTCAGCGTCGGTCTCGGCCCAGAG52.272727272727273No Hit
CCTGTTCGATACCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCAGTG52.272727272727273No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA52.272727272727273No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA52.272727272727273No Hit
CCTATTTGCTCCCCACGCTTTCGTGCTTCAGTGTCAGAATCCAGACCAGA31.3636363636363635No Hit
CCTGTTTGCTCCCCACACTTTCGTGCCTCAACGTCAGTTACTGTCCAGAA31.3636363636363635No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTGACGGCCCAGAG31.3636363636363635No Hit
CCTGTTTGCTCCCCACACTTTCGCGCCTCAGCGTCAGTTACAGTCCAGTT31.3636363636363635No Hit
CCTGTTTACTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGTA20.9090909090909091No Hit
CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTACAGCCCAGCA20.9090909090909091No Hit
CCTGTTCGATACCCACGCTTTCGAGCCTCAGCGTCAGTCGCGAGTTGGTA20.9090909090909091No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTAGCAGTCCAGTA20.9090909090909091No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTA20.9090909090909091No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTAACAGTCCAGCA20.9090909090909091No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA20.9090909090909091No Hit
CCTGTTTGCACCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT20.9090909090909091No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAG10.45454545454545453No Hit
CCTGTTCGCTCCCCCAGCTTTCGCGCCTCAGCATCGGTCTCGGCCCAGAG10.45454545454545453No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGATGCTAGACCAGA10.45454545454545453No Hit
CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCTGTTTCACCCTAGCA10.45454545454545453No Hit
CCTGTTTGCTACCCACGCTTTCGTTCCTCCGCGTCAGTTAAAGCCCATCA10.45454545454545453No Hit
CCTGTATGCACCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTATCGCACCTCAGTGTCAGTATCAGTCCAGGT10.45454545454545453No Hit
CCTGTTCGCTACCCGCACTTTCGAGCCTCAGCGTCAGTTGCGCCCCAGTC10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAATGGTCCAGTT10.45454545454545453No Hit
CCTGTTCGCTCCCCCCGCTTTCGTGCCTCAGCGTCAGTCTCCGCCCCGAA10.45454545454545453No Hit
CGGCAGACTTGCCACCAAGTCCAACCAAATCAAGCAACTTATCAGAAACG10.45454545454545453No Hit
CCTGTTTGCTCCCCACACTTTCGCGCCTCAGCGTCATTTACAGTCCAGTT10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTCTCGCGCCTCAGCGTCATTAACGGGCCAGTG10.45454545454545453No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG10.45454545454545453No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTCACAGTCCAGCA10.45454545454545453No Hit
CCTGTTCGCTACCCACGCTCTCGTGCGTCAGCGTCAGTTACAGTCTGGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTA10.45454545454545453No Hit
GTTAAAGAGGCCGCTGGCACACAAACACCACAGTGGAGATCTCGGTGGTC10.45454545454545453No Hit
ACTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGAAGCAGTCCAGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCGTTCGCACCTCAGCGTCAGTATCAGTCCAGGT10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTATCGGGCCAGTA10.45454545454545453No Hit
TCTGTTTGATACCCGCACTTTCGAGCCTCAGCGTCAGTTATGCCCCGGCA10.45454545454545453No Hit
CCTGTTCGCTACCCACGCTCTCGTGCATCAGCGTCAGCTACAGTCTGGTA10.45454545454545453No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG10.45454545454545453No Hit
ACTGTTTGATCCCCGCACTTTCGAGCCTCAGCGTCAGTTATGCCCCGGCA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTTCAGTCCAGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGATATCGTCCAGTA10.45454545454545453No Hit
CCCATTTGCTCCCCTAGCTTTCGTTCCTCAGCGTCAGTTACAGCCCAGCA10.45454545454545453No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTAGCAGTCCAGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGGCCAGAG10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGTCGTCCAGAA10.45454545454545453No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAATGTCAGTTACAGGTTAGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACCGTCCAGTC10.45454545454545453No Hit
AATGATACCGCGGCCGCTGGAACACAATCACCATAGTGTAGATCTCAGTG10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGAA10.45454545454545453No Hit
CCTATTTGCTCCCCACGCTTTCGGGACTGAGCGTCAGTTATGCGCCAGAT10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGTA10.45454545454545453No Hit
ACAATAGACACCAGCCAGTAAGTCGGACTCCAGGGCTATTTAATCCTGTT10.45454545454545453No Hit
CCTGTTTGCACCACACGCTTACGAGCCTCAGTGTCAGATACAGGCCAGAG10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCATCAGTGTCAGTTACAGGCCAGAG10.45454545454545453No Hit
CCTGTTCGCTACCCACGCTCTCGTGCATCAGCGTCAGTTACAGTCTGGTA10.45454545454545453No Hit
CCTGTTCGCTCCCCCAGCTTTCGCGCCTCAGCGTCGCTCTCGGCCCAGAG10.45454545454545453No Hit
CCTGTTTGATACCTGCACTTTCGAGCCTCAGCGTCAGTTATGCCCCGGCA10.45454545454545453No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGGCCAGAG10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTACGCGCCTCAGCGTCAGTTTTCGTCCAGAA10.45454545454545453No Hit
CCTGTTCGCTCCCCCGGCTTTCGCGCCTGAGCGTCAGGACCGGCCCAGAG10.45454545454545453No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGAA10.45454545454545453No Hit
CCTGTTTGCTCCCCACACTTTCGTGCCTCAGTGTCAGTTTCAGTCCAGAA10.45454545454545453No Hit
CCTGTTTGCTACCCACACTTTCGTGCCTCAGCGTCAGTTAAAGCCCAGCA10.45454545454545453No Hit
ACTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA10.45454545454545453No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGTTGCCCAGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG10.45454545454545453No Hit
CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGTT10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTAATGTCCAGCA10.45454545454545453No Hit
CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTTAGAGCCCAGCA10.45454545454545453No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGCGTAGTA10.45454545454545453No Hit
CCTGTTTGATCCCCATGCTTTCGTGCCTCAGCGTCAATCAATGCCCAGAT10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGTA10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCCTTCGTGCATGAGCGTCAGTACAGGTCCAGGG10.45454545454545453No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA10.45454545454545453No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGACAGTGACGGCCCAGAG10.45454545454545453No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAATATTTGCCTAGTA10.45454545454545453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)