FastQCFastQC Report
Sat 11 May 2024
EGAF00006172422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006172422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17360573
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTCAACTTATCTCGTA3123541.7992148070227865TruSeq Adapter, Index 13 (97% over 41bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)