FastQCFastQC Report
Mon 22 May 2023
EGAF00006172456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006172456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15679069
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCGTAGATCTCGTA2919991.8623490973858206TruSeq Adapter, Index 15 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)