FastQCFastQC Report
Tue 30 May 2023
EGAF00006172575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006172575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4779
Sequences flagged as poor quality0
Sequence length200
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGGCCAGTG64913.580246913580247No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGTGTAGCC60812.722326846620632No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGTTATCCCAGGG1583.306130989746809No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTACTGGTCCAGTT1182.4691358024691357No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTATCGTCCAGTA1092.2808118853316595No Hit
CCTGTTTGATCCCCACACTTTCGTGCATCAGCGTCAGTATCGTATTAGTA1082.2598870056497176No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA1052.197112366603892No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGG972.0297133291483576No Hit
CCTGTTTGATCCCCACGCTGTCGCGCCTGAGCGTCAGTTACGGGCCAGTG951.987863569784474No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGTTGGCCCAGGG931.94601381042059No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGTCGTCCAGAA861.7995396526469971No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA861.7995396526469971No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA801.6739903745553464No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTATTGGCCCAGGG791.6530654948734045No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTGTTGATCCAGAT751.5693659761456373No Hit
CCTGTTTGCTCCCCACGCCTTCGGGCCTCAACGTCAGTCACAGTCCAGCA741.5484410964636954No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGCGTAGTA721.5065913370998116No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTATCGGGCCAGTG631.3182674199623352No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGG601.2554927809165097No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTCACGTCCCAGGG360.7532956685499058No Hit
CCTGTTTGATCCCCGCACTTTCGAGCCTCAGCGTCAGTTACAGCTTCGTT340.7114459091860221No Hit
CCTGTTTGCTACCCACACCTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA150.31387319522912743No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATGAGCGTCAATGCCAGACCAGGT150.31387319522912743No Hit
CCTGTTTGCTCCCCACGCTTTCGCGTCTCAGCGTCAGTCACCGTCCAGAT140.2929483155471856No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATCAGCGTCAGTACCGGGCCAGTG140.2929483155471856No Hit
CCTGTTTGCTCCCCACGCTTTCGTAGTTGAGTGTCAGTACCTGTCCAGGC130.2720234358652438No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCACTATATGTGTAGCC130.2720234358652438No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA130.2720234358652438No Hit
CCTGTTTGCTCCCCATGCTTTCGCGCCTCAGCGTCAGTTTCAGCCCAGTA90.18832391713747645No Hit
AATGATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTG90.18832391713747645No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTGTTGCTCCAGAT90.18832391713747645No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTATCGGGCCAGTA80.16739903745553464No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGCGTCAATATATGTCTAGCC70.1464741577735928No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTATTGGCCCAGTG70.1464741577735928No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGTCCAGTG70.1464741577735928No Hit
CCTTCTCGCTACCCAAGCCTTCGTCCCTCAACGTCAGTTTTTACATAGAA60.12554927809165098No Hit
CCTGTTTGATCCCCACGCTATCGTGCATGAGCGTCAGAAACGGGCCAGTG60.12554927809165098No Hit
GATACCGCGGCTGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC60.12554927809165098No Hit
GATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTGGTC60.12554927809165098No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGTTATCCCAGTG60.12554927809165098No Hit
CCTGTTTGATCCCCACGCTTTCGCGCTTTAGCGTCAGAAACGGACCAGTG60.12554927809165098No Hit
AATGATACCGCGGCGGCTGGCACACAATTACCATAGTGTAGATCTCGGTG50.10462439840970915No Hit
CCTGTTTGCTCCCCACGCTTTCGCCCATCAGCGTCAGTACCGGGCCAGTG50.10462439840970915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)