FastQCFastQC Report
Sun 21 May 2023
EGAF00006172636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006172636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1192
Sequences flagged as poor quality0
Sequence length200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCA21417.953020134228186No Hit
AACGTAGGTCACAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGCA1169.731543624161073No Hit
TACGTAGGTGACAAGCGTTGTCTGGATTTACTGGGTGTAAAGGGCGCGTA413.4395973154362416No Hit
TACGGAGGGTGCGAGCGTTGTCCGGATTTATTGGGTTTAAAGGGTGCGTA332.7684563758389262No Hit
TACGTAGGTGGCGAGCGTTATCCGGATTTACTGGGCGTAAAGGGAGCGTA292.4328859060402683No Hit
TACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTA292.4328859060402683No Hit
GTTTTAATTTTTGTAGAGAAGGAGTCTTGCTATGTTGCCCAGGCTGGTCT282.348993288590604No Hit
TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA272.2651006711409396No Hit
TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA262.1812080536912752No Hit
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTA151.2583892617449663No Hit
TACGTAGGTGGCGAGCGTTATCCGGAATGATTGGGCGTAAAGGGTGCGTA110.9228187919463088No Hit
TACGGAGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTA80.6711409395973155No Hit
CACGATTAACCCAAGTCAATAGAAGCCGGCTTAAAGAGTGTTTTAGATCA80.6711409395973155No Hit
TACGTAGGGGGCGAGCGTTATCCGGATTCATTGGGCGTAAAGCGCGCGTA70.587248322147651No Hit
TACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTA70.587248322147651No Hit
CACGATTAACCCTAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCA50.41946308724832215No Hit
CACGATTAACCCAAGTCAATAGAAGCCTGCGTAAAGAGTGTTTTAGATCA40.33557046979865773No Hit
CATTATTAGAAACCCTAGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT40.33557046979865773No Hit
CATTAGATACCCGGGTAGTCCGGCTGACTGACTCTTGACTGAGGTATCTC40.33557046979865773No Hit
CACGATTAACCCAAGTCAATAGAAGCCGGCGTAGAGAGTGTTTTAGATCA40.33557046979865773No Hit
CATTATTAGAAACCCGAGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT40.33557046979865773No Hit
CATTAGAAACCCTGGTAGTCCGGCTGACTGACTCTTGACTGAGGTATCTC30.25167785234899326No Hit
CATTATTAGAAACCCGGGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT30.25167785234899326No Hit
CACGATTAACCCAAGTCAATATAAGCCGGCGTAAAGAGTGTTTTAGATCA30.25167785234899326No Hit
CATTAGAAACCCGAGTAGTCCGGCTGACTGACTCTTGACTGAGGTATCTC30.25167785234899326No Hit
TACGGAAGGTCCGGGCGTTGTCCGGATTTATTGGGTTTAAAGGGAGCGTA30.25167785234899326No Hit
CATTATTAGAAACCCCTGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT30.25167785234899326No Hit
CACGATTAACCCAAGTCAATAGAAACCGGCATAAAGAGTGTTTTAGATCA30.25167785234899326No Hit
CCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGCT20.16778523489932887No Hit
TACGTAGGTGACAAGCGTTGTCTGGATTTACTGGGTGTAAAGGGCACGTA20.16778523489932887No Hit
TACGTAGGTGGCGAGCGTTATCCGGATTTACTGAGCGTAAAGGGAGCGTA20.16778523489932887No Hit
GGTCTGGAAACGTACGGATTGTTCAGTAACTTGACTCATGATTTCTTACC20.16778523489932887No Hit
ACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATC20.16778523489932887No Hit
TACGTAGGGGGCTAGCGTTATCCGGAATTACTGAGCGTAAAGGGTGCGTA20.16778523489932887No Hit
TACGTAGGTGACAAGCGTTGTCTGGATTTACTGAGTGTAAAGGGCGCGTA20.16778523489932887No Hit
TATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGC20.16778523489932887No Hit
TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCA20.16778523489932887No Hit
TACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGG20.16778523489932887No Hit
CATTATTAGAAACCCGTGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT20.16778523489932887No Hit
TACGATTAACCCAAGCTAATAAAACTCGGCATAAAGAGTGTTTAAGGTCT20.16778523489932887No Hit
ATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG20.16778523489932887No Hit
CATTATTAGAAACCCGTGTAGTCCGGCTGACTGACTCTTTACTGAGGTAT20.16778523489932887No Hit
GCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACAT20.16778523489932887No Hit
GTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGCCTGTTT20.16778523489932887No Hit
CATTATTAGATACCCTAGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT20.16778523489932887No Hit
CATTATTAGAAACCCTGGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT20.16778523489932887No Hit
TGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTTGGT20.16778523489932887No Hit
CATTATTAGAAACCCCGGTAGTCCGGCTGACTGACTCTTGACTGAGGTAT20.16778523489932887No Hit
TGTGACTCATATCTAAACCAGTCCTTGACGAACGTGCCAAGCATATTAAG20.16778523489932887No Hit
TTTTTTATGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTGATTATTT20.16778523489932887No Hit
TACGGAGGGTGCGAGCGTTGTCCGGATTTATTGGGTTTAAAGGGTGCGCA20.16778523489932887No Hit
CACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATTA20.16778523489932887No Hit
AACTAACGATCGCCTACTGGGGAGCAGAGTTTCTACCCAGAAGAGGAAAC20.16778523489932887No Hit
GCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACT20.16778523489932887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)