FastQCFastQC Report
Sun 21 May 2023
EGAF00006172711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006172711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153321
Sequences flagged as poor quality0
Sequence length200
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT8327654.31480358202725No Hit
CAGGTAGTTAGACCAGCACGTAAAGAGTCTAATACAAAAGGCAGAGCAGA113417.396899315814533No Hit
CCCAGTTTGTGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT22561.4714227013911987No Hit
CCCAGTTTGGGTCTTAGCTCTTGTGTGTTCAGATATGTTAAAGCCACTTT20151.3142361450812348No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCATATATGTTAAAGCCACTTT19291.2581446768544426No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATCTGTTAAAGCCACTTT17521.1427006085272076No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCCCTTT12460.8126740629137562No Hit
CAGGTAGTTAGACCAGCACGTAAAGAGTCTAATACAACAGGCAGAGCAGA12250.7989773090444231No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGCTATGTTAAAGCCACTTT12100.7891939134234711No Hit
CCACTACAGGGCTTGGGGCAAATTTTAAAAGGTACCCTTCCCGTGGGTTA11490.7494081045649325No Hit
CCCAGTTTTGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT11080.7226668232009966No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA10840.7070133902074732No Hit
CAGGTAGTTAGACCAGCACGTAAAGCGTCTAATACAAAAGGCAGAGCAGA10550.6880988253402992No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA9560.6235284142420151No Hit
CCCAGTTTGGTTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT7430.48460419642449504No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG7030.4585151414352894No Hit
CAGGTAGTTAGACCAGCACGTAAAGAGTCTAATACAAAAGGCCGAGCAGA6720.43829612381865496No Hit
CCCAGTTTGGGTCTTAGTTATTCTGTGTTCAGATGCATTAAAGCCACTTT5660.36916012809726No Hit
CCCATTTTGGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT4630.30198081150005546No Hit
CCGGTAGTTAGACCAGCACGTAAAGAGTCTAATACAAAAGGCAGAGCAGA4100.267412813639358No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTTTTCAGATATGTTAAAGCCACTTT3090.20153794979161366No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATGCGTTAAAGCCACTTT2940.19175455417066153No Hit
CCCAGTTTGGGTCTTAGCTCTTGTGTGTTCAGATCTGTTAAAGCCACTTT2810.18327561129916972No Hit
CCCAGTTTGTGCCTTAGCTGTTGTGTCCTCAGGACATTAAAGTCCCTTTC2760.18001447942551901No Hit
CCCAGTTTGGGCCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT2720.17740557392659845No Hit
CCTATTTGCTCCCCACGCTTTCGTGCTTCAGTGTCAGCAACAGACCAGAC2600.16957885742983675No Hit
CCCAGTTTCGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACTTT2520.16436104643199562No Hit
CCCAGTTTGTGTCTTAGCTATTGTGTGTTCAGATCTGTTAAAGCCACTTT2450.15979546180888463No Hit
CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTA2370.1545776508110435No Hit
CCCAGTTTGGGTCTTAGCTCTTGTGTGTTCAGATATGTTAAAGCCCCTTT2370.1545776508110435No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTGTCGGACCAGTT2340.15262097168685307No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTA2310.15066429256266264No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA2270.14805538706374208No Hit
CAGGTAGTTAGACCAGCACGTAAAGAGTCTAATACAAAAGGCAGCGCAGA2140.13957644419225024No Hit
CCTGTTTGATCCCCACACTTTCGTGCATCAGCGTCAGTATCGTATTAGTA2140.13957644419225024No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAATACCAGTCCAGTG2080.1356630859438694No Hit
CAGGTAGTTAGACCAGCACGTAAAGCGTCTAATACAACAGGCAGAGCAGA1990.12979304857129811No Hit
CAGGTAGTTAGACCAGCACGTAAAGAGTCTAATACACAAGGCAGAGCAGA1920.12522746394818712No Hit
CAGGTAGTTAGACCAGCACGTACAGAGTCTAATACAAAAGGCAGAGCAGA1910.124575237573457No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATATGTTAAGGCCACTTT1880.12261855844926657No Hit
CCCAGTTTGGGTCTTAGCTCTTGTGTGTTCATATATGTTAAAGCCACTTT1860.12131410569980627No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCACCTT1850.12066187932507616No Hit
CCCAGTTTTGGTCTTAGCTATTGTGTGTTCATATATGTTAAAGCCACTTT1850.12066187932507616No Hit
CCCAGTTTGTGTCTTAGCTCTTGTGTGTTCAGATATGTTAAAGCCACTTT1790.1167485210766953No Hit
CCCAGTTTGTGTCTTAGCTATTGTGTGTTCATATATGTTAAAGCCACTTT1750.11413961557777473No Hit
CCCAGTTTGGGTCTTAGCTATTGCGTGTTCAGATATGTTAAAGCCACTTT1730.11283516282831446No Hit
CCCAGTTTGGGTCTTAGCTATTGTGCGTTCAGATATGTTAAAGCCACTTT1660.10826957820520346No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGCTCTGTTAAAGCCACTTT1650.10761735183047333No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATCTGTTAAAGCCCCTTT1640.10696512545574317No Hit
CAGGTAGTTATACCAGCACGTAAAGAGTCTAATACAAAAGGCAGAGCAGA1630.10631289908101303No Hit
CATCTTCAAACCTCCGACTTTCATTCTTGATTAATGAAAACATTCTTGGC1610.10500844633155276No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTATTGGCCCAGGG1600.10435621995682262No Hit
CCCAGTTTGGGTCTTAGCTATTGTGTGTTCAGATATGTTAAAGCCGCTTT1570.1023995408326322No Hit
CAGGTAGTTAGACCAGCACGTAAAGAGTCTAATACAACAGGCCGAGCAGA1550.1010950880831719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)