FastQCFastQC Report
Mon 22 May 2023
EGAF00006172894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006172894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32501095
Sequences flagged as poor quality0
Sequence length35-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCC411030.12646650828225942No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATGT370700.11405769559456382No Hit
GTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTC336370.10349497455393426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)