FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006173212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464123696
Sequences flagged as poor quality0
Sequence length150
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC16394620.35323815916522394Illumina Single End PCR Primer 1 (96% over 33bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC15425540.3323583805986066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)