FastQCFastQC Report
Fri 10 May 2024
EGAF00006173462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394076478
Total Bases59.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCG4856750.12324384405404679No Hit
GGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCGTCCTCCTCCCC4692080.11906521352944084No Hit
AAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCGTCCTCCTCC4083760.10362861596626428No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)