FastQCFastQC Report
Fri 10 May 2024
EGAF00006173483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452835169
Total Bases68.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT38489410.8499651227398373No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT24158920.5335036157494207No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT17074320.3770537530842707No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC11314070.24984963126836998No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT11121330.24559333641332085No Hit
TTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTT6521670.14401862855311928No Hit
TTATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTT5469620.12078611323582952No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG5233560.11557317890210068No Hit
TTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTTT4622840.10208659389703895No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)