FastQCFastQC Report
Fri 10 May 2024
EGAF00006173525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365263166
Total Bases55.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT18968530.5193113285340137No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT16088800.44047145996648346No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT11360080.3110108288334773No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC10904140.2985283219058557No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT5634280.15425261905548943No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG5323700.1457497085813465No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)