FastQCFastQC Report
Fri 10 May 2024
EGAF00006173531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395991790
Total Bases59.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT23030480.5815898354862358No Hit
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT22528870.5689226536742088No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC15995270.4039293339894749No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT14162300.35764125311789924No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT6394760.16148718638838447No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG4891510.12352554076941848No Hit
TCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCT4596860.11608472993846666No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)