FastQCFastQC Report
Mon 13 May 2024
EGAF00006173542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences323304292
Total Bases48.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA5267260.16291958165529086No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG3722140.11512807259607923No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT3587590.1109663585907483No Hit
GGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCCTCCTCCCCC3397880.10509851196160427No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)