FastQCFastQC Report
Mon 6 May 2024
EGAF00006173576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542680184
Total Bases81.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCG8358010.15401354695494096No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT6340010.11682774103282902No Hit
CGGGGCGCGGCCGGAAAGGCGGCCGCCCCCTCGCCCGTCACGCACCGCAC5843110.1076713352039403No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)