FastQCFastQC Report
Sun 19 Mar 2023
EGAF00006173595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335177974
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT32648390.9740613206284252No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT20419120.6092023218685605No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT15891340.4741164764006838No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC11623980.3468002345524053No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT10501500.3133111604761952No Hit
TTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTT4855800.1448722880579259No Hit
TTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTTT4382730.1307582938012508No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG4222660.1259826219965158No Hit
ATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTTTTTT4159410.12409556482371958No Hit
TCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCT3733750.11139604298700129No Hit
GCCCCGTGTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAGAGGGA3596230.10729314808735015No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)