FastQCFastQC Report
Mon 13 May 2024
EGAF00006173597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences281850225
Total Bases42.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT20644880.7324769742511293No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT14623800.5188500381718695No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT6806540.24149492873386919No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT5438060.19294148159718516No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC5169050.18339705068534182No Hit
TTATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTT4038360.14328035395394842No Hit
TTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTT3432230.1217749604421994No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)