FastQCFastQC Report
Fri 10 May 2024
EGAF00006173603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469423411
Total Bases70.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT53786031.1457892542133994No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT28908100.6158214380151569No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT16422600.3498462073933505No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT15447190.3290673118985112No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC8987090.1914495483055488No Hit
TTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTT8518110.18145899417019062No Hit
TTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTTT6978970.14867111090886773No Hit
ATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTTTTTT6818120.1452445668501182No Hit
TTATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTT6474550.13792558803591498No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG5712140.1216841739493048No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)