FastQCFastQC Report
Thu 16 May 2024
EGAF00006173620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298965367
Total Bases45.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCCTCCTCCC5094690.1704107084751392No Hit
GGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCCTCCTCCCCC5024750.16807130706882178No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA4174800.13964159266648435No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT3845600.12863028378802152No Hit
CGGGGCGCGGCCGGAAAGGCGGCCGCCCCCTCGCCCGTCACGCACCGCAC3785600.12662336236424335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)