FastQCFastQC Report
Mon 13 May 2024
EGAF00006173623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences334042230
Total Bases50.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT20260270.6065182237587146No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT12594310.3770274794297715No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT8711720.26079696570101335No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC5796240.1735181806204563No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT5747330.17205399449045708No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)