FastQCFastQC Report
Sat 4 Feb 2023
EGAF00006173738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58888180
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCT1812180.3077323836464296No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1559890.26489016980996866No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG963360.16359140323236346No Hit
CTCAGTTCCGATGAGAACGACGGTATGAGTTCTCACTCATTTTGTTCAGCT632280.10736959437360775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)