FastQCFastQC Report
Sat 4 Feb 2023
EGAF00006173787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58919420
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA881430.14959923230744634No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG652520.11074786547457527No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG629960.10691890721259646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)