FastQCFastQC Report
Wed 8 Feb 2023
EGAF00006173816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1888944
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTTCCGCCTCAGCTGACAGGATTAAGTGATTGAAGTAAAGACAAGCAT97520.5162672900837717No Hit
GTAGTGACAGGATTAAGAGATTAAATAAGACAGGCATAAGAAATCACGAG44690.23658721486714268No Hit
CTCTGAGGCGACTTACATCTTCCTCAGCTGACAGGATTAAGAGATGAAAG38300.20275879009647718No Hit
TTAGTATATTGCTCAAACACACATGCTGTACAATTTGTGTACTTAACGCA26700.14134881711686528No Hit
AGGTAAACAGAGGGACCGGCTGAAGCCATCTCAAAAGAACATAAATTGTG26570.14066060190243862No Hit
AGACTAACATACATCCTCCTCGGCTTACCAGATGACAGGATTAAGAGACT25490.13494312165950922No Hit
TTAGTTGACGGGATTAAGAAATTAAAGTAAAGACAGGTATAGGAAATCAC20730.10974385688511676No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)