FastQCFastQC Report
Wed 8 Feb 2023
EGAF00006173817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1888944
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCTGTGAAGATTTCATGGACACTTATCACTTCCCCAGTCAATACCCTG97780.517643720512625No Hit
GTCTAGTTCCCCAAATTAATACTTTTGTAATTTCTTATGCCTGTCTTTAC41240.21832304186889606No Hit
GTAGTCAATCATTAGATGACCATTAAACTAACAAAGCAGAGACGTCAGTG34570.18301230740561922No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31700.16781863305635317No Hit
GAACTAAATTGTAAAGATTTCATGGACACTTATCACTTCCCCAATCAATA25230.13356669123065584No Hit
TTTGTGAACATAAAATTGTGAAGATTTCATGGACAATTATCACTTCCCCA25130.1330372949118661No Hit
GAGTCAATCATCACAGGGTCCTGAGGCGACATACATCCTCCTCAGTTTAC23880.12641984092699413No Hit
GTAGTCTGAACGTAAATTTTGAAGATTTCATGGACATTTATCACTTCTCC20710.10963797762135882No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)